- Please Install The Hdf5 Library
- Install Hdf5 Library Ubuntu
- Install Hdf5 Library Windows
- Install Hdf5 Library
- Install Hdf5 Library Python
INSTALL - Start Here. General instructions for compiling and installing the library INSTALLCMAKE - instructions for building with CMake (Kitware.com) INSTALLparallel - instructions for building and configuring Parallel HDF5 INSTALLWindows and INSTALLCygwin - MS Windows installations. You can specify build options for h5py as environment variables when you build it from source: $ HDF5DIR=/path/to/hdf5 pip install -no-binary=h5py h5py $ HDF5VERSION=X.Y.Z pip install -no-binary=h5py h5py $ CC='mpicc' HDF5MPI='ON' HDF5DIR=/path/to/parallel-hdf5 pip install -no-binary=h5py h5py. Jul 21, 2019 So, it is best to install the HDF5 version suggested by CGNS. Change into the CGNS directory. Cd CGNS There are install scripts provided in the bin folder. Three of them in fact, one to install HDF5 (./bin/install-hdf.sh), another to configure CGNS for our system (./bin/config-cgns.sh) and the last one to install the configured CGNS (./bin/build-cgns.sh). Of course, we need to do the installation in the order I have listed.
DOI: 10.18129/B9.bioc.rhdf5R Interface to HDF5
Bioconductor version: Release (3.12)
This package provides an interface between HDF5 and R. HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM.
Author: Bernd Fischer [aut], Mike Smith [aut, cre] , Gregoire Pau [aut], Martin Morgan [ctb], Daniel van Twisk [ctb]
Maintainer: Mike Smith <mike.smith at embl.de>
Citation (from within R, enter citation('rhdf5')):
Please Install The Hdf5 Library
Installation
To install this package, start R (version '4.0') and enter:
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
Install Hdf5 Library Ubuntu
| HTML | R Script | Reading HDF5 Files In The Cloud |
| HTML | R Script | rhdf5 - HDF5 interface for R |
| HTML | R Script | rhdf5 Practical Tips |
| Reference Manual | ||
| Text | NEWS |
Details
Install Hdf5 Library Windows
| biocViews | DataImport, Infrastructure, Software |
| Version | 2.34.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 16 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), methods |
| Imports | Rhdf5lib(>= 1.11.0), rhdf5filters |
| LinkingTo | Rhdf5lib |
| Suggests | bit64, BiocStyle, knitr, rmarkdown, testthat, microbenchmark, dplyr, ggplot2 |
| SystemRequirements | GNU make |
| Enhances | |
| URL | https://github.com/grimbough/rhdf5 |
| BugReports | https://github.com/grimbough/rhdf5/issues |
| Depends On Me | GenoGAM, GSCA, HDF5Array, HiCBricks, LoomExperiment |
| Imports Me | BayesSpace, BgeeCall, biomformat, bnbc, bsseq, CiteFuse, cmapR, CoGAPS, CopyNumberPlots, CRISPRseek, cTRAP, diffHic, DmelSGI, DropletUtils, EventPointer, FRASER, GenomicScores, gep2pep, h5vc, HiCcompare, hicrep, IONiseR, MafH5.gnomAD.r3.0.GRCh38, MethylSeqData, MOFA, MOFA2, phantasus, PureCN, recountmethylation, ribor, scCB2, scone, signatureSearch, signatureSearchData, slinky |
| Suggests Me | edgeR, slalom, Spectra, SummarizedExperiment, tximport, zellkonverter |
| Links To Me | |
| Build Report |
Install Hdf5 Library
Package Archives
Follow Installation instructions to use this package in your R session.
Install Hdf5 Library Python
| Source Package | rhdf5_2.34.0.tar.gz |
| Windows Binary | rhdf5_2.34.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | rhdf5_2.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rhdf5 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rhdf5 |
| Package Short Url | https://bioconductor.org/packages/rhdf5/ |
| Package Downloads Report | Download Stats |